PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_3AL_1D19F288D.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family B3
Protein Properties Length: 251aa    MW: 28555.4 Da    PI: 5.128
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_3AL_1D19F288D.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.31.9e-1534129294
                            EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                     B3   2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvF 82 
                            +k+l +sd +++gr+vlpkk  e++       ++ ++ l++ d ++ + W++k++y  ++ks++yvl+ ++ ++v+ ++L++gDf+++
  Traes_3AL_1D19F288D.1  34 QKELRNSDISQLGRIVLPKKESEAYlpilT--SKDGRSLRMHDlLNAQLWTFKYRYwpNNKSRMYVLE-NTGDYVRTHNLRVGDFIMI 118
                            79999**********************653..445678*****8888*********89999999**99.******************* PP

                            EE-SSSEE..EE CS
                     B3  83 kldgrsefelvv 94 
                            + d++ + ++v+
  Traes_3AL_1D19F288D.1 119 YKDDD-KNRFVI 129
                            *5554.433344 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-1832130IPR015300DNA-binding pseudobarrel domain
CDDcd100171.44E-2232133No hitNo description
Gene3DG3DSA:2.40.330.101.1E-2232134IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.6E-1133135IPR003340B3 DNA binding domain
PROSITE profilePS508639.29133135IPR003340B3 DNA binding domain
PfamPF023628.6E-1234129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
AIYFPLVEAV NELDLNRVAL DPNHQVAGLR VILQKELRNS DISQLGRIVL PKKESEAYLP  60
ILTSKDGRSL RMHDLLNAQL WTFKYRYWPN NKSRMYVLEN TGDYVRTHNL RVGDFIMIYK  120
DDDKNRFVIR AKKAGDDLVA SLPQFHEHIS SILPIPEVDD YVSLIPPPAD ISAFAPQADE  180
NYEMFDGIFN SLPEIPVANV RYSDFFDPFS DCMDMSNPGL NANNSANLAS HFHDERTGLS  240
LFPNPKSGPL M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3751420.0AK375142.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3086F07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754315.11e-149PREDICTED: B3 domain-containing protein LFL1-like
SwissprotA4LBC01e-117LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLW5CB320.0W5CB32_WHEAT; Uncharacterized protein
STRINGMLOC_15725.31e-167(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.15e-43B3 family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]